Allie RDF Data Portal

Contents

1. Allie is a search service for abbreviations and long forms in life sciences.
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2. You can access the RDFized Allie database.
   • SPARQL Endpoint: http://data.allie.dbcls.jp/sparql
   • SPARQL Explorer
   • Faceted Search
   • Allie Vocabulary
   • Allie RDF data structure
   
   
3. You can download the tab-delimited or RDF files.
   • Download site

Examples

• SPARQL Queries
  1. Retrieves pairs of abbreviations and long forms whose relevant research area matches "D001432"(Bacteriology).
     PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> PREFIX mesh: <http://id.nlm.nih.gov/mesh/> PREFIX allie: <http://purl.org/allie/ontology/201108#> select ?Frequency ?ShortForm ?LabelShortForm ?LongForm ?LabelLongForm where { graph <http://purl.org/allie> { [] a allie:PairCluster; allie:inResearchAreaOf mesh:D001432; allie:hasShortFormRepresentationOf ?ShortForm; allie:hasLongFormRepresentationOf ?LongForm; allie:frequency ?Frequency. ?ShortForm rdfs:label ?LabelShortForm . ?LongForm rdfs:label ?LabelLongForm . FILTER ( lang(?LabelShortForm) = 'en' && lang(?LabelLongForm) = 'en' && xsd:integer(?Frequency) >= 100 ) } } ORDER BY DESC (xsd:integer(?Frequency)) ?LabelShortForm ?LabelLongForm Issue Query
     
     
  2. Retrieves long forms with their variations whose corresponding abbreviation and long form matches 'SFP' and 'specific pathogen-free' respectively.
     PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX allie: <http://purl.org/allie/ontology/201108#> select distinct ?LongForm ?LabelLongForm where { graph <http://purl.org/allie> { [] a allie:PairCluster; allie:contains [ allie:hasMemberOf [ allie:hasLongFormOf ?LongForm ] ] ; allie:hasShortFormRepresentationOf [ rdfs:label 'SPF'@EN ]; allie:hasLongFormRepresentationOf [ rdfs:label 'specific pathogen-free'@EN ]. ?LongForm rdfs:label ?LabelLongForm FILTER ( lang(?LabelLongForm) = 'en' ) } } ORDER BY DESC(?LabelLongForm) Issue Query
     
     
  3. Retrieves pairs of abbreviations and long forms under the condition that the abbreviations don't start with "s" and the long forms start with "specific".
     PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX allie: <http://purl.org/allie/ontology/201108#> select ?ShortForm ?LabelShortForm ?LongForm ?LabelLongForm where { graph <http://purl.org/allie> { [] a allie:PairCluster; allie:contains [ allie:hasMemberOf [ allie:hasShortFormOf ?ShortForm ; allie:hasLongFormOf ?LongForm ]]. ?ShortForm rdfs:label ?LabelShortForm . ?LongForm rdfs:label ?LabelLongForm . FILTER (!regex(?LabelShortForm,'^s','i') && regex(?LabelLongForm, '^specific', 'i')) } } Issue Query
     
     

Allie by Database Center for Life Science (DBCLS) is licensed under a Creative Commons Attribution 2.1 Japan License.